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	<title>Sidney's weblog</title>
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	<link>http://www.sidney.com/wp</link>
	<description>The fewer, the higher!</description>
	<pubDate>Sun, 04 May 2008 15:54:49 +0000</pubDate>
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			<item>
		<title>New Zealand Phylogenetics Meeting 2008</title>
		<link>http://www.sidney.com/wp/2008/05/05/new-zealand-phylogenetics-meeting-whitianga08/33/</link>
		<comments>http://www.sidney.com/wp/2008/05/05/new-zealand-phylogenetics-meeting-whitianga08/33/#comments</comments>
		<pubDate>Sun, 04 May 2008 15:52:51 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[thesis]]></category>

		<category><![CDATA[bioinformatics]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/?p=33</guid>
		<description><![CDATA[This was a really fun conference which I wrote up last March for an article in our research group&#8217;s blog. It just occurred to me that I should mention here too, so here it is, just two months late.
]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2008/05/05/new-zealand-phylogenetics-meeting-whitianga08/33/feed/</wfw:commentRss>
		</item>
		<item>
		<title>WordPress wp-latex plugin without dvipng</title>
		<link>http://www.sidney.com/wp/2007/11/19/wordpress-wp-latex-plugin-without-dvipng/27/</link>
		<comments>http://www.sidney.com/wp/2007/11/19/wordpress-wp-latex-plugin-without-dvipng/27/#comments</comments>
		<pubDate>Sun, 18 Nov 2007 19:17:40 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<category><![CDATA[WordPress]]></category>

		<category><![CDATA[thesis]]></category>

		<category><![CDATA[LaTeX]]></category>

		<category><![CDATA[math]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2007/11/19/wordpress-wp-latex-plugin-without-dvipng/27/</guid>
		<description><![CDATA[I wanted to install the excellent wp-latex plugin for WordPress, which allows the inclusion of LaTeX equations in posts and comments but my ISP did not have dvipng installed, one of its prerequisites, nor some libraries I would need to build my own copy there. I patched the plugin to instead use dvips and convert, [...]]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2007/11/19/wordpress-wp-latex-plugin-without-dvipng/27/feed/</wfw:commentRss>
		</item>
		<item>
		<title>FLAC to Audio CD burning on Linux and Mac OS X</title>
		<link>http://www.sidney.com/wp/2007/11/06/flac-to-audio-cd-burning-on-linux-and-mac-os-x/26/</link>
		<comments>http://www.sidney.com/wp/2007/11/06/flac-to-audio-cd-burning-on-linux-and-mac-os-x/26/#comments</comments>
		<pubDate>Tue, 06 Nov 2007 02:29:50 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<category><![CDATA[audio]]></category>

		<category><![CDATA[cd ripping]]></category>

		<category><![CDATA[cdrdao]]></category>

		<category><![CDATA[flac]]></category>

		<category><![CDATA[mac]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2007/11/06/flac-to-audio-cd-burning-on-linux-and-mac-os-x/26/</guid>
		<description><![CDATA[I went through all the work described in the rest of this post, typed it up, then while putting in links found this blog post that explains the same thing and includes a short script for the whole thing. Oh, well.
Some years ago I backed up our music CD collection to disk, settling on what [...]]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2007/11/06/flac-to-audio-cd-burning-on-linux-and-mac-os-x/26/feed/</wfw:commentRss>
		</item>
		<item>
		<title>scaedpc</title>
		<link>http://www.sidney.com/wp/2007/05/09/scaedpc/25/</link>
		<comments>http://www.sidney.com/wp/2007/05/09/scaedpc/25/#comments</comments>
		<pubDate>Wed, 09 May 2007 03:53:37 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2007/05/09/scaedpc/25/</guid>
		<description><![CDATA[I don&#8217;t believe this claim that scaedpc cannot be found in a Google search!
]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2007/05/09/scaedpc/25/feed/</wfw:commentRss>
		</item>
		<item>
		<title>PhD Student!</title>
		<link>http://www.sidney.com/wp/2006/04/21/phd-student/22/</link>
		<comments>http://www.sidney.com/wp/2006/04/21/phd-student/22/#comments</comments>
		<pubDate>Fri, 21 Apr 2006 04:36:13 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2006/04/21/phd-student/22/</guid>
		<description><![CDATA[My MSc programme has been retroactively converted to a PhD. I am now officially almost nine months into my doctoral dissertation work. Here is my research proposal for Simulation Models of Prebiotic Evolution of Genetic Coding, expanded from the earlier MSc proposal. I&#8217;m still in the Computer Science Department but I&#8217;m also formalizing my relationship [...]]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2006/04/21/phd-student/22/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Artificial Life X Conference paper accepted</title>
		<link>http://www.sidney.com/wp/2005/12/19/artificial-life-x-conference-paper-accepted/20/</link>
		<comments>http://www.sidney.com/wp/2005/12/19/artificial-life-x-conference-paper-accepted/20/#comments</comments>
		<pubDate>Mon, 19 Dec 2005 00:03:25 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2005/12/19/artificial-life-x-conference-paper-accepted/20/</guid>
		<description><![CDATA[I&#8217;ve had a paper accepted by the Tenth Artificial Life Conference for publication in the proceedings and for oral presentation! This is my first published paper in my new academic career. Here is the abstract of the version I submitted, before any revisions I&#8217;m about to do [updated as per final submission 12 Jan 06]:
Simulation [...]]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2005/12/19/artificial-life-x-conference-paper-accepted/20/feed/</wfw:commentRss>
		</item>
		<item>
		<title>My MSc Thesis Proposal</title>
		<link>http://www.sidney.com/wp/2005/08/28/my-msc-thesis-proposal/18/</link>
		<comments>http://www.sidney.com/wp/2005/08/28/my-msc-thesis-proposal/18/#comments</comments>
		<pubDate>Sun, 28 Aug 2005 02:04:54 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2005/08/28/my-msc-thesis-proposal/18/</guid>
		<description><![CDATA[I&#8217;m now a full time student, working on a master&#8217;s thesis. Here is my proposal for Simulation Models of Prebiotic Evolution of Genetic Coding that has been accepted by the Computer Science Department.
]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2005/08/28/my-msc-thesis-proposal/18/feed/</wfw:commentRss>
		</item>
		<item>
		<title>WordPress 1.5.2 security upgrade</title>
		<link>http://www.sidney.com/wp/2005/08/20/wordpress-152-security-upgrade/16/</link>
		<comments>http://www.sidney.com/wp/2005/08/20/wordpress-152-security-upgrade/16/#comments</comments>
		<pubDate>Sat, 20 Aug 2005 02:32:29 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<category><![CDATA[WordPress]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2005/08/20/wordpress-152-security-upgrade/16/</guid>
		<description><![CDATA[I should probably feel very secure after so many security upgrades.
]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2005/08/20/wordpress-152-security-upgrade/16/feed/</wfw:commentRss>
		</item>
		<item>
		<title>Even better than an original idea</title>
		<link>http://www.sidney.com/wp/2005/07/07/even-better-than-an-original-idea/15/</link>
		<comments>http://www.sidney.com/wp/2005/07/07/even-better-than-an-original-idea/15/#comments</comments>
		<pubDate>Thu, 07 Jul 2005 03:08:49 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2005/07/07/even-better-than-an-original-idea/15/</guid>
		<description><![CDATA[Has anyone looked at the role of interdependence between species in Darwinian evolution as being similar to autocatalytic processes that are conjectured to be the basis for pre-biotic evolution?
Looking at what Google has to say:
(search for autocatalytic interdependent species evolution)
Wow! Articles on politics, ecology, and cognitive systems.
This is a great technique to remember &#8212; Put [...]]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2005/07/07/even-better-than-an-original-idea/15/feed/</wfw:commentRss>
		</item>
		<item>
		<title>WordPress 1.5.1.3 security upgrade</title>
		<link>http://www.sidney.com/wp/2005/07/05/wordpress-1513-security-upgrade/14/</link>
		<comments>http://www.sidney.com/wp/2005/07/05/wordpress-1513-security-upgrade/14/#comments</comments>
		<pubDate>Tue, 05 Jul 2005 03:48:44 +0000</pubDate>
		<dc:creator>sidney</dc:creator>
		
		<category><![CDATA[General]]></category>

		<category><![CDATA[WordPress]]></category>

		<guid isPermaLink="false">http://www.sidney.com/wp/2005/07/05/wordpress-1513-security-upgrade/14/</guid>
		<description><![CDATA[So many security upgrades, so little time&#8230;
]]></description>
		<wfw:commentRss>http://www.sidney.com/wp/2005/07/05/wordpress-1513-security-upgrade/14/feed/</wfw:commentRss>
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